Instrumental Techniques
Code: 100998 ECTS Credits: 6| Degree | Type | Year | Semester |
|---|---|---|---|
| 2500502 Microbiology | FB | 2 | 1 |
Contact
- Name:
- Inmaculada Ponte Marull
- Email:
- inma.ponte@uab.cat
Use of Languages
- Principal working language:
- catalan (cat)
- Some groups entirely in English:
- No
- Some groups entirely in Catalan:
- No
- Some groups entirely in Spanish:
- No
Teachers
- Jordi Vilardell Vila
Prerequisites
It is recommended to review the basic concepts of Biochemistry of first year, especially the physical-chemical characteristics of macromolecules.
It is recommended to take this course at the same time as "Laboratori Integrat III" ( 100978 ) of this degree.
Objectives and Contextualisation
MODULE II: INSTRUMENTAL TECHNIQUES IN BIOCHEMISTRY
The general objective is the students learn the instrumental techniques that are developed in a laboratory and that they may need throughout their studies and professional activity.
This objective can be specified in:
-Acquire and understand the theoretical basis of the main instrumental techniques
-Application of these techniques in the field of microbiology
-Strengthen the self-learning ability of the student. The student must learn to obtain information and acquire the habit of using this information critically.
-Increase student interest in the technical aspect of science.
Competences
- Act with ethical responsibility and respect for fundamental rights and duties, diversity and democratic values.
- Apply suitable methodologies to isolate, analyse, observe, cultivate, identify and conserve microorganisms.
- Identify and solve problems.
- Make changes to methods and processes in the area of knowledge in order to provide innovative responses to society's needs and demands.
- Take account of social, economic and environmental impacts when operating within one's own area of knowledge.
- Take sex- or gender-based inequalities into consideration when operating within one's own area of knowledge.
- Use molecular and immunological techniques in the characterisation of microorganisms and materials of biological origin.
Learning Outcomes
- Act with ethical responsibility and respect for fundamental rights and duties, diversity and democratic values.
- Assimilate the basic principles of mass spectrometry and its applications.
- Identify and solve problems.
- Identify culture media, culture types and the separation and cloning of eukaryotic cells and the generation of monoclonal antibodies
- Identify suitable techniques for detecting, quantifying and purifying biological molecules and for determining protein structure.
- Identify the principles and the sample preparation methods in electron microscopy.
- Know the functioning of the equipment used in microscopy, chromatography, filtering, dialysis, cytometry, spectroscopy, electrophoresis, amplification and DNA sequencing, among others.
- Know the principles behind techniques that are used to analyse components of cells, viruses and microbial products.
- Make changes to methods and processes in the area of knowledge in order to provide innovative responses to society's needs and demands.
- Take account of social, economic and environmental impacts when operating within one's own area of knowledge.
- Take sex- or gender-based inequalities into consideration when operating within one's own area of knowledge.
Content
Module II: INSTRUMENTAL TECHNIQUES IN BIOCHEMISTRY
Unit 1: Basic Principles of absorption spectroscopy. Lambert-Beer Law. Spectrophotometers. Spectroscopic analysis of biopolymers. Fundamentals of spectrofluorimetry. Spectrofluorimeter. Applications.
Unit 2: Centrifugation. Fundamentals.Sedimentation Coefficient. Factors on which the sedimentation coefficient depends. Instrumentation: preparative and analytical ultracentrifuge.
Unit 3. Chromatographic techniques. Introduction. Fundamentals and characteristics. Chromatography type: gel filtration, ion exchange, hydrophobic, affinity. High Performance Liquid Chromatography (HPLC). Gas chromatography.
Unit 4: Purification Strategies of macromolecules. Stages of purification. Optimization of each stage. Preparative techniques of nucleic acids: plasmid DNA, bacteriophage DNA, genomic DNA, total RNA and messenger RNA.
Unit 5: Electrophoretic techniques. Protein and Nucleic acid electrophoresis.
Unit 6. Hybridization techniques: Western-blot, Southern-blot, Northern-blot, Southwesthern, Microarrays, FISH, in situ hybridization. Labeling techniques.
Unit 7: Polymerase Chain Reaction: PCR. Fundamentals of the technique. Primers design . Set up of the reaction. Applications.
Unit 8: Recombinant DNA technology.
Unit 9. Mass spectrometry. MALDI-TOF bacterial identification. Other techniques for biopolymers.
Unit 10: Radioactive isotopes. Kinetics of disintegration. Isotopes used in Biochemistry. Labeling. Methods for LabelingNucleic Acids and Protein. Detection & Measurement of Radioactivity. Protection in the use of radioactive isotopes. Chemiluminescence systems as an alternative to radioactive methods.
Unit 11: Immunological techniques. Preparation of monoclonal and polyclonal antibodies. Antigen-antibody reaction. Examples of Immunotechniques
Unit 12: Electron microscope (TEM / SEM). Sample preparation methods.
Methodology
Teaching methodology includes theory classes (30 h), problem classes (12 h), seminar classes (3 h)
Annotation: Within the schedule set by the centre or degree programme, 15 minutes of one class will be reserved for students to evaluate their lecturers and their courses or modules through questionnaires.
Activities
| Title | Hours | ECTS | Learning Outcomes |
|---|---|---|---|
| Type: Directed | |||
| Magisterial class | 30 | 1.2 | 2, 7, 8, 4, 6, 5 |
| Problem Class | 12 | 0.48 | 2, 7, 8, 4, 6, 3, 5 |
| Seminars Class | 3 | 0.12 | 2, 7, 8, 4, 6, 3, 5 |
| Type: Supervised | |||
| Group and individual tutoring about seminars and problems | 10 | 0.4 | 2, 7, 8, 4, 6, 3, 5 |
| Type: Autonomous | |||
| Autonomous Study | 62 | 2.48 | 2, 7, 8, 4, 6, 3, 5 |
| Problem resolution | 14 | 0.56 | 2, 7, 8, 4, 6, 3, 5 |
| Work redaction (seminar) | 9 | 0.36 | 4, 6 |
Assessment
1. Theory (60%)
Two written exams. These test will consist of short questions relating concepts, definitions (30%) and a block multi-choice questions (30%).
2. Problems (25%)
2.1 Resolution of exercises in class (10%)
2.2 Problems written exam (15%)
3. Seminars (15% of module)
3.1 An individual written test will be done with the content of the seminar sessions.(10%)
3.2 Seminar summary and Participation during seminar class (5%).
Assessment Activities
| Title | Weighting | Hours | ECTS | Learning Outcomes |
|---|---|---|---|---|
| Resolution of exercises in class | 10% | 1 | 0.04 | 1, 11, 10, 2, 7, 8, 4, 6, 3, 5, 9 |
| Seminar summary and Participation during seminar class | 5% | 0.5 | 0.02 | 1, 11, 10, 2, 7, 8, 4, 6, 3, 5, 9 |
| Theory, problems and seminars written exam | 85% | 8.5 | 0.34 | 2, 7, 8, 4, 6, 3, 5 |
Bibliography
-Creighton, T.E., The biophysical chemistry of nucleic acids & proteins, Helvetian Press, 
eBook | 2011
https://login.are.uab.cat/login?url=http://search.ebscohost.com/login.aspx?direct=true&db=edsknv&AN=edsknv.kpBCNAP002&site=eds-live
-Sheehan, D.,Physical biochemistry : principles and applications 2nd ed. Chichester: John Wilwy & Sons, eBook | 2009
https://login.are.uab.cat/login?url=http://search.ebscohost.com/login.aspx?direct=true&db=edsebk&AN=266019&site=eds-live
- Johann H. Peters;Horst Baumgarten;Johann H. Peters;Horst BaumgartenMonoclonal Antibodies, eBook | 2012
https://login.are.uab.cat/login?url=http://search.ebscohost.com/login.aspx?direct=true&db=edsebk&AN=2861880&site=eds-live
- Bartlett, John M. S.;Stirling, David;Bartlett, John M. S.;Stirling, DavidPCR Protocols eBook | 2003;
https://login.are.uab.cat/login?url=http://search.ebscohost.com/login.aspx?direct=true&db=edsebk&AN=103842&site=eds-live
-
-Reiner Westermeier; Electrophoresis in Practice : A Guide to Methods and Applications of DNA and Protein Separations eBook | 2016
https://login.are.uab.cat/login?url=http://search.ebscohost.com/login.aspx?direct=true&db=edsebk&AN=1202071&site=eds-live
JoVE: The Journal of Visualized Experiments/JoVE: Science Education Collection.
-Metzemberg, S., Working with DNA, Ed, Taylord & Francis Group. California, 2007
-Freifelder, D. Técnicas de Bioquímica y Biología Molecular. Editorial Reverté. Barcelona. 1991
-García-Segura, JL Técnicas Instrumentales de Análisis en Bioquímica. Editorial Síntesis. Madrid. 1999
-Plummer, D.T. Introducció a la Bioquímica Pràctica. Publicacions UB. 1999
-Skoog, D.A., Holler, F.J., Nieman, A Principios de Análisis Instrumental. 6ª ed. McGraw-Hill. 2008
-Harlow, E., Lane, D, Antibodies: A Laboratory Manual. Cold Spring Harbor Laboratory. New York. 1988
Direccions de interès relacionades amb diferents tècniques instrumentals:
Aula Virtual de la Autònoma Interactiva: https://cv2008.uab.cat
Biorom 2008: http://www.um.es/bbmbi/AyudasDocentes/bIOromDISCO/indices/index.html
Roolpi. Tutorial explicativo de la PCR: http://palou.uib.es/roolpi/docencia/docencia.html
University of Akron: http://ull.chemistry.uakron.edu/analytical/index.html
Software
Microsoft Word, PowerPoint, Excel.